Publications

In-Vivo Fusion of Human Cancer and Hamster Stromal Cells Permanently Transduces and Transcribes Human DNA: 2014
David M. Goldenberg1,2, Robert J. Rooney3, Meiyu Loo2, Donglin Liu2, Chien-Hsing Chang2
1Garden State Cancer Center, Center for Molecular Medicine and Immunology, Morris Plains, New Jersey, United States of America, 2Immunomedics, Inc., Morris Plains, New Jersey, United States of America, 3Genome Explorations, Inc., Memphis, Tennessee, United States of America

Molecular Profiles of Pyramidal Neurons in the Superior Temporal Cortex in Schizophrenia: 2014
Charmaine Y. Pietersen1,2 , Sarah A. Mauney1, Susie S. Kim1, Maribel P. Lim1, Robert J. Rooney3, Jill M. Goldstein4, Tracey L. Petreyshen5, Larry J. Seidman6, Martha E. Shenton4, Robert W. Mccarley2,6,7, Kai-C. Sonntag2,8 and Tsung-Ung W. Woo1,2,6
1Laboratory of Cellular Neuropathology, McLean Hospital, Belmont, Massachusetts, USA. 2Department of Psychiatry, Harvard Medical School, Boston, Massachusetts, USA. 3Genome Explorations Inc., Memphis, Tennessee, USA. 4Department of Psychiatry, Brigham and Women ’ s Hospital, Boston, Massachusetts, USA. 5Department of Psychiatry, Massachusetts General Hospital, Boston, Massachusetts, USA. 6Department of Psychiatry, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA. 7Department of Psychiatry, Veterans Affairs Boston Healthcare System, Brockton, Massachusetts, USA. 8Department of Psychiatry, McLean Hospital, Belmont, Massachusetts, USA.

Prediction of the Number of Activated Genes in Multiple Independent Cd+2 - and As+3 -Induced Malignant Transformations of Human Urothelial Cells (UROtsa): 2014
Scott H. Garrett, Seema Somji, Donald A. Sens, Ke K. Zhang
Department of Pathology, School of Medicine and Health Sciences, University of North Dakota, Grand Forks, North Dakota, United States of Americ

Systems Genetics of Liver Fibrosis: Identification of Fibrogenic and Expression Quantitative Trait Loci in the BXD Murine Reference Population: 2014
Rabea A. Hall1, Roman Liebe1,6, Katrin Hochrath1, Andrey Kazakov2, Rudi Alberts2, Ulrich Laufs2, Michael Bӧhm2, Hans-Peter Fischer4, Robert W. Williams5, Klaus Schughart3, Susanne N. Weber1 and Frank Lammert1,,2*
1Department of Medicine II, Saarland University Medical Center, Homburg, Germany, 2Department of Medicine III, Saarland University Medical Center, Homburg, Germany, 3Department of Infection Genetics, Helmholtz Center for Infection Research, University of Veterinary Medicine Hannover and University of Tennessee Health Science Center, Braunschweig, Germany, 4Department of Pathology, University Hospital Bonn, Bonn, Germany, 5Department of Anatomy and Neurobiology, University of Tennessee, Memphis, Tennessee, United States of America, 6Department of Medicine II, Section Molecular Hepatology, Medical Faculty Mannheim, Heidelberg University, Germany

Molecular Profiles of Parvalbumin-Immunoreactive Neurons in the Superior
Charmaine Y. Pietersen1,2 , Sarah A. Mauney1, Susie S. Kim1, Eleonora Passeri1,2, Maribel P. Lim1, Robert J. Rooney3, Jill M. Goldstein4, Tracey L. Petreyshen5, Larry J. Seidman6, Martha E. Shenton4, Robert W. Mccarley2,6,7, Kai-C. Sonntag2,8 and Tsung-Ung W. Woo1,2,6
1Laboratory of Cellular Neuropathology, McLean Hospital, Belmont, Massachusetts, USA. 2Department of Psychiatry, Harvard Medical School, Boston, Massachusetts, USA. 3Genome Explorations Inc., Memphis, Tennessee, USA. 4Department of Psychiatry, Brigham and Women ’ s Hospital, Boston, Massachusetts, USA. 5Department of Psychiatry, Massachusetts General Hospital, Boston, Massachusetts, USA. 6Department of Psychiatry, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA. 7Department of Psychiatry, Veterans Affairs Boston Healthcare System, Brockton, Massachusetts, USA. 8Department of Psychiatry, McLean Hospital, Belmont, Massachusetts, USA.

Transcriptional Response of Selenopolypeptide Genes and Selenocysteine Biosynthesis Machinery Genes in Escherichia coli during Selenite Reduction: 2014
Antonia Y. Tetteh1,2, Katherine H. Sun3, Chiu-Yueh Hung1, Farooqahmed S. Kittur1, Gordon C. Ibeanu1, Daniel Williams4 and Jiahua Xie1
1Department of Pharmaceutical Sciences, Biomanufacturing Research Institute & Technology Enterprise, North Carolina Central University, Durham, NC 27707, USA. 1Department of Biochemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana. 3School of Geography and Geosciences, University of St Andrews, St Andrews, Fife KY16 9AX, UK. 4Department of Biology, North Carolina Central University, Durham, NC 27707, USA.

Downregulation of GABA A Receptor Protein Subunits α6, β2, δ, ε, γ2, θ, and ρ2 in Superior Frontal Cortex of Subjects with Autism: 2014
S., Fatemi; Teri, Reutiman; Timothy, Folsom; Oyvind, Rustan; Robert, Rooney; Paul, Thuras
1Division of Neuroscience Research, Department of Psychiatry, University of Minnesota Medical School, 420 Delaware St SE, MMC 392, Minneapolis, MN, 55455, USA.

miR-126 contributes to Parkinson’s disease by dysregulating the insulin-like growth factor/phosphoinositide 3-kinase signaling: 2014
Woori Kim, Yenarae Lee, Noah D. McKenna, Ming Yi, Filip Simunovic, Yulei Wang, Benjamin Kong, Robert J. Rooney, Hyemyung Seo, Robert M. Stephens, Kai C. Sonntag
1Department of Psychiatry, McLean Hospital, Harvard Medical School, Belmont, MA, USA; Department of Psychiatry, McLean Hospital, Harvard Medical School, Belmont, MA, USA. 2Department of Psychiatry, McLean Hospital, Harvard Medical School, Belmont, MA, USA. 3Bioinformatics Support Group, Advanced Biomedical Computing Center, NCI-Frederick, Frederick, MD, USA. 4Life Technologies, Foster City, CA, USA. 5Genome Explorations Inc, Memphis, TN, USA. 6Division of Molecular & Life Sciences, College of Science & Technology, Hanyang University, Seoul, Korea. 7Department of Psychiatry, McLean Hospital, Harvard Medical School, Belmont, MA, USA.

Expression of GABAA α2-, β1- and ε-receptors are altered significantly in the lateral cerebellum of subjects with schizophrenia, major depression and bipolar disorder: 2013
SH Fatemi1,2,3, TD Folsom1, RJ Rooney4 and PD Thuras5
1Division of Neuroscience Research, Department of Psychiatry, University of Minnesota Medical School, Minneapolis, MN, USA. 2Department of Pharmacology, University of Minnesota Medical School, Minneapolis, MN, USA. 3Department of Neuroscience, University of Minnesota Medical School, Minneapolis, MN, USA. 4Genome Explorations, Memphis, TN, USA and 5Department of Psychiatry, VA Medical Center Minneapolis, MN, USA.

Phospho-sulindac inhibits pancreatic cancer growth: NFATc1 as a drug resistance candidate: 2013
Onika T. Murray, Chi C. Wong, Kvetoslava Vrankova and Basil Rigas
Division of Cancer Prevention, Department of Medicine, Stony Brook University, Stony Brook, NY 11794-8173, USA

Neutrophil differentiation into a unique hybrid population exhibiting dual phenotype and functionality of neutrophils and dendritic cells: 2013
Hironori Matsushima1, Shuo Geng1, Ran Lu1, Takashi Okamoto1, Yi Yao1, Nobuyasu Mayuzumi1, Paul F. Kotol2, Benjamin J. Chojnacki1, Toru Miyazaki3, Richard L. Gallo2 and Akira Takashima1
1Department of Medical Microbiology and Immunology, University of Toledo College of Medicine, Toledo, OH; 2Division of Dermatology, Department of Medicine, University of California at San Diego and VA San Diego Health Care System, San Diego, CA; and 3Division of Molecular Biomedicine for Pathogenesis, Center for Disease Biology and Integrative Medicine, University of Tokyo, Tokyo, Japan

Transcriptome analysis of cytoplasmic male sterility and restoration in CMS-D8 cotton: 2013
Hideaki Suzuki1, Jiannong Xu, Laura Rodriguez-Uribe1 and Jinfa Zhang1
1Department of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA 2Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, NM 87131, USA and 3Department of Biology, New Mexico State University, Las Cruces, NM 88003, USA

Antitumor Effects of Chimeric Receptor Engineered Human T Cells Directed to Tumor Stroma: 2013
Sunitha Kakarla1,2,3, Kevin KH Chow1,2,3, Melinda Mata1,2,4, Donald R Shaffer1,2,3, Xiao-Tong Song1,4, Meng-Fen Wu5, Hao Liu5, Lisa L Wang2,6, David R Rowley7, Klaus Pfizenmaier8 and Stephen Gottschalk1,2,3,4,6
1Center for Cell and Gene Therapy, Texas Children’s Hospital, The Methodist Hospital, Baylor College of Medicine, Houston, Texas, USA; 2Texas Children’s Cancer Center, Texas Children’s Hospital, Baylor College of Medicine, Houston, Texas, USA ;3Interdepartmental Program in Translational Biology and Molecular Medicine, Baylor College of Medicine, Houston, Texas, USA; 4Department of Pathology and Immunology, Baylor College ofMedicine, Houston, Texas, USA; 5Biostatistics Shared Resource Dan L Duncan Center, Baylor College of Medicine, Houston, Texas, USA; 6Departmentof Pediatrics, Baylor College of Medicine, Houston, Texas, USA; 7Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston,Texas, USA; 87Institute of Cell Biology and Immunology, University of Stuttgart, Stuttgart, Germany

mRNA and protein expression for novel GABAA receptors θ and ρ2 are altered in schizophrenia and mood disorders; relevance to FMRP-mGluR5 signaling pathway: 2013
*SH Fatemi1,2,3, TD Folsom1, RJ Rooney4 and PD Thuras5 *
1Division of Neuroscience Research, Department of Psychiatry, University of Minnesota Medical School, Minneapolis, MN, USA. 2Department of Pharmacology, University of Minnesota Medical School, Minneapolis, MN, USA. 3Department of Neuroscience, University of Minnesota Medical School, Minneapolis, MN, USA. 4Genome Explorations, Memphis, TN, USA and 5VA Medical Center, Department of Psychiatry, Minneapolis, MN, USA.

Shifts in the Vascular Endothelial Growth Factor Isoforms Result in Transcriptome Changes Correlated with Early Neural Stem Cell Proliferation and Differentiation in Mouse Forebrain: 2013
Jacob T. Cain, Matthew A. Berosik, Stephanie D. Snyder, Natalie F. Crawford, Shirin I. Nour, Geoffrey J. Schaubhut, and Diane C. Darland*
Department of Biology, University of North Dakota, Grand Forks, North Dakota

MicroRNA-221 Modulates RSV Replication in Human Bronchial Epithelium by Targeting NGF Expression: 2012
Sreekumar Othumpangat, Cheryl Walton and Giovanni Piedimonte*
Department of Pediatrics and Pediatric Research Institute, West Virginia University School of Medicine, Morgantown, West Virginia, United States of America

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome: 2012
Björn Reinius1,2,3, Martin M Johansson1, Katarzyna J Radomska1, Edward H Morrow1, Chandrasekhar Kanduri6, Rickard Sandberg2,3, Robert W Williams7 and Elena Jazin1 *
1Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden. 2Ludwig Institute for Cancer Research, Stockholm, Sweden. 3Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden. 4School of Life Sciences, University of Sussex, Brighton, United Kingdom. 5Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden. 6Department of Medicaland Clinical Genetics, Department of Biomedicine, The Sahlgrenska Academy,Gothenburg University, Gothenburg, Sweden.. 7Department of Anatomy and Neurobiology, University of Tennessee, Knoxville, USA.

Evaluation of Arabidopsis thaliana as a Model Host for Xylella fastidiosa: 2012
Elizabeth E. Rogers
USDA, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Crop Diseases, Pests and Genetics Unit, 9611 S. Riverbend Ave., Parlier, CA 93648, U.S.A.

CM156, a Sigma Receptor Ligand, Reverses Cocaine-Induced Place Conditioning and Transcriptional Responses in the Brain: 2012
Yan-Tong Xua, Matthew J. Robsona, Wioletta Szeszel-Fedorowicza, Divyen Patelb, Robert Rooneyb, Christopher R. McCurdyc and Rae R. Matsumotoa,c,*
aDepartment of Basic Pharmaceutical Sciences, School of Pharmacy, West Virginia University, Morgantown, WV 26506, USA. bGenome Explorations Inc., 654 Jefferson Avenue, Memphis, TN 38105, USA. cDepartment of Medicinal Chemistry and Department of Pharmacology, University of Mississippi, University, MS 38677, USA.

Intra-Ophthalmic Artery Chemotherapy Triggers Vascular Toxicity through Endothelial Cell Inflammation and Leukostasis: 2012
Jena J. Steinle1,2, Qiuhua Zhang1, Karin Emmons Thompson3, Jordan Toutounchian3, C. Ryan Yates3, Carl Soderland4, Fan Wang5, Clinton F. Stewart5, Barrett G. Haik1,6, J. Scott Williams7, J. Scott Jackson8, Timothy D. Mandrell8, Dianna Johnson1,2 and Matthew W. Wilson1,6,9
From the Departments of 1Ophthalmology, 2Anatomy and Neurobiology, 3Pharmaceutical Sciences, 7Radiology, and 8Comparative Medicine, University of Tennessee Health Science Center, Memphis, Tennessee; 4Cell Systems Corporation, Kirkland, Washington; and the Departments of 5Pharmaceutical Sciences, 6Surgery, Division of Ophthalmology and 9Pathology, St. Jude Children’s Research Hospital, Memphis, Tennessee.

Ciliary Neurotrophic Factor Induces Genes Associated with Inflammation and Gliosis in the Retina: A Gene Profiling Study of Flow-Sorted, Műller Cells: 2011
Wei Xue1*, Radu I. Cojocaru1*, V. Joseph Dudley1, Matthew Brooks2, Anand Swaroop2, Vijay P. Sarthy1*
1Department of Ophthalmology, Northwestern University Feinberg Medical School, Chicago, Illinois, United States of America, 2Neurobiology, Neurodegeneration andRepair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Identification of differentially expressed genes associated with semigamy in Pima cotton Gossypium barbadense L. through comparative microarray analysis: 2011
Jessica Curtiss1, Laura Rodriguez-Uribe1, J McD Stewart2 and Jinfa Zhang1*
1Department of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA. 2Department of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA.

Panhistone deacetylase inhibitors inhibit proinflammatory signaling pathways to ameliorate interleukin-18-induced cardiac hypertrophy: 2011
Gipsy Majumdar1, Robert J. Rooney2, I. Maria Johnson1 and Rajendra Raghow1,3
1Department of Veterans Affairs Medical Center. 2Genome Explorations; and 3Department of Pharmacology, University of Tennessee Health Science Center, Memphis, Tennessee

Vascular endothelial growth factor (VEGF) isoform regulation of early forebrain development: 2011
Diane C. Darlande,, Jacob T. Caine, Matthew A. Berosike, Magali Saint-Genieza, Patrick W. Odense, Geoffrey J. Schaubhute,1, Sarah Frische, Anat Stemmer-Rachamimovd, Tristan Darlande,f, Patricia A. D’Amorea,b,c,*
aSchepens Eye Research Institute, Boston, MA, USA, bDepartment of Ophthalmology, Harvard Medical School, Boston, MA, USA, cDepartment of Pathology, Harvard Medical School, Boston, MA, USA, dMassachusetts General Hospital, Molecular Neuro-Oncology Laboratory, Boston, MA, USA, eUniversity of North Dakota, Department of Biology, Grand Forks, ND, USA, fTurtle Mountain Community College, Belcourt, ND, USA

The viral theory of schizophrenia revisited: Abnormal placental gene expression and structural changes with lack of evidence for H1N1 viral presence in placentae of infected mice or brains of exposed offspring: 2011
S. Hossein Fatemia,b,c, Timothy D. Folsoma, Robert J. Rooneyd, Susumu Morie, Tess E. Kornfieldc, Teri J. Reutimana, Rachel E. Kneelanda, Stephanie B. Liescha, Kegang Huae, John Hsue, and Divyen H. Pateld
aDepartment of Psychiatry, Division of Neuroscience Research, University of Minnesota Medical School, 420 Delaware St SE, MMC 392, Minneapolis, MN 55455, USA. bDepartment of Pharmacology, University of Minnesota Medical School, 420 Delaware St SE, MMC 392, Minneapolis, MN 55455, USA. cDepartment of Neuroscience, University of Minnesota Medical School, 420 Delaware St SE, MMC 392, Minneapolis, MN 55455, USA. dGenome Explorations, Inc. 654 Jefferson Ave., Memphis, TN 38105. eDepartment of Radiology, Division of NMR, Johns Hopkins University, School of Medicine, 720 Rutland Avenue, Baltimore, MD 21287, USA.

HDM-2 inhibition suppresses expression of ribonucleotide reductase subunit M2, and synergistically enhances gemcitabine-induced cytotoxicity in mantle cell lymphoma: 2011
Richard J. Jones1, Veerabhadran Baladandayuthapani2, Sattva Neelapu1, Luis E. Fayad1, Jorge E. Romaguera1, Michael Wang1, Rakesh Sharma1, Dajun Yang3 and Robert Z. Orlowski1,4
1Department of Lymphoma and Myeloma, The University of Texas M. D. Anderson Cancer Center, Houston, TX; 2Department of Biostatistics, The University of Texas M. D. Anderson Cancer Center, Houston, TX; 3Ascenta Therapeutics Inc, Malvern, PA; and 4Department of Experimental Therapeutics, The University of Texas M. D. Anderson Cancer Center, Houston, TX

Alternatively spliced variants of interleukin-4 promote inflammation differentially: 2011
Irina G. Luzina,†, Virginia Lockatell, Nevins W. Todd,†, Kendrick Highsmith, Achsah D. Keegan, Jeffrey D. Hasday,† and Sergei P. Atamas,†*
*Department of Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA; and †Baltimore VA Medical Center, Baltimore, Maryland, USA

Levels of phosphodiesterase 4A and 4B are altered by chronic treatment with psychotropic medications in rat frontal cortex: 2010
S. Hossein Fatemi1,2,3,, Timothy D. Folsom1, Teri J. Reutiman1, Natalie N. Braun1 and Luke G. Lavergne1*
1Department of Psychiatry, Division of Neuroscience Research, University of Minnesota Medical School, MMC 392, Minneapolis, Minnesota 55455, USA. 2Department of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota 55455. 3Department of Neuroscience, University of Minnesota Medical School, Minneapolis, Minnesota 55455

Distinct gene signature revealed in white blood cells, CD4+ and CD8+ T-cells in (NZBx NZW) F1 lupus mice after tolerization with anti-DNA Ig peptide: 2010
Singh RP, Dinesh R, Elashoff D, de Vos S, Rooney RJ, Patel D, La Cava A and Hahn BH
1Division of Rheumatology, David Geffen School of Medicine at UCLA, University of California at Los Angeles, Los Angeles, CA 90095, USA.

Effects of FoxO4 overexpression on cholesterol biosynthesis, triacylglycerol accumulation, and glucose uptake: 2010
Jun Zhu*, Khalid Mounzih*, Eric F. Chehab*, Nico Mitro†, Enrique Saez† and Farid F. Chehab1,*
Department of Laboratory Medicine*, University of California , San Francisco, CA ; and Department of Chemical Physiology and The Skaggs Institute for Chemical Biology, †The Scripps Research Institute, La Jolla , CA

Shaping Gene Expression in Activated and Resting Primary Macrophages by IL-101: 2002
Lang R1, Patel D, Morris JJ, Rutschman RL, Murray PJ.
Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, TN 38015, USA.

mRNA and Protein Levels for GABAAα4, α5, β1 and GABABR1 Receptors are Altered in Brains From Subjects With Autism: 2010
S. Hossein Fatemi*1,2,3, Teri J. Reutiman1, Timothy D. Folsom1, Robert J. Rooney4, Divyen H. Patel4 and Paul D. Thuras1,5
1Department of Psychiatry, Division of Neuroscience Research, University of Minnesota Medical School, 2Department of Pharmacology, University of Minnesota Medical School, 3Department of Neuroscience, University of Minnesota Medical School, 4Genome Explorations, Inc., 5VA Medical Center, Department of Psychiatry

Phosphodiesterase signaling system is disrupted in the cerebella of subjects with schizophrenia, bipolar disorder, and major depression: 2010
Fatemi SH, Folsom TD, Reutiman TJ, Vazquez G

Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines: 2010
Anna T. Rogojina, William E. Orr, Bong K. Song and Eldon E. Geisert, Jr.
Department of Ophthalmology, Health Science Center, University of Tennessee, Memphis, TN

Response of corneal epithelial cells to Staphylococcus aureus: 2010
Susan R. Heimer†,‡, Ai Yamada†,§, Hugh Russell† and Michael S. Gilmore*
‡University of California, Berkeley; School of Optometry; Berkeley, CA USA; †Nihon University School of Medicine; Department of Ophthalmology; Tokyo, Japan§, †These authors contributed equally to this work.

Early detection of squamous cell lung cancer in sputum by a panel of microRNA markers: 2010
Lingxiao Xing1, Nevins W Todd2, Lei Yu1, HongBin Fang3 and Feng Jiang1
1Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA. 2Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA and 3Division of Biostatistics of The University of Maryland Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore,MD, USA.

Evidence of a Role for Activation of Wnt/_-Catenin Signaling in the Resistance of Plasma Cells to Lenalidomide: 2010
Chad C. Bjorklund‡, Wencai Ma‡, Zhi-Qiang Wang‡, R. Eric Davis‡, Deborah J. Kuhn‡, Steven M. Kornblau§¶, Michael Wang‡, Jatin J. Shah‡ and Robert Z. Orlowski‡_1
From the Departments of ‡Lymphoma and Myeloma, §Stem Cell Transplantation and Cellular Therapy, ¶Leukemia and Experimental Therapeutics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030

Targeted Deletion of Dicer from Proximal Tubules Protects against Renal Ischemia-Reperfusion Injury: 2010
Qingqing Wei,* Kirti Bhatt,* Hong-Zhi He,† Qing-Sheng Mi,† Volker H. Haase,‡ and Zheng Dong*
†Departments of Dermatology and Internal Medicine, Henry Ford Health System, Detroit, Michigan and ‡Departments of Medicine, Cancer Biology, and Molecular Physiology and Biophysics, Vanderbilt School of Medicine, Nashville, Tennessee.

Antimicrobial peptide MUC7 12-mer activates the calcium/calcineurin pathway in Candida albicans: 2010
Maciej Lis1, Teresa T. Liu2,§, Katherine S. Barker2, P. David Rogers2, and Libuse A.Bobek1
1Department of Oral Biology, University at Buffalo, The State University of New York, Buffalo, New York 14214,USA. 2Department of Pharmacy, College of Pharmacy, University of Tennessee Health Science Centre, and Le Bonheur Children’s Medical Centre, Room 304 West Patient Tower, Children’s Foundation Research Centre, 50 North Dunlap Street, Memphis, TN 38163, USA

The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato: 2010
Sandra Orellana, Mónica Yañez, Analía Espinoza, Isabel Verdugo, Enrique González, Aimón Ruiz-Lara and José A. Casaretto
Instituto de Biología Vegetal y Biotecnología, Universidad de Talca, 2 Norte 685, Talca, Chile

Early detection of lung adenocarcinoma in sputum by a panel of microRNA markers: 2010
Lei Yu1, Nevins W. Todd22, Lingxiao Xing1, Ying Xie1, Howard Zhang2, Zhenqiu Liu3, HongBin Fang3, Jian Zhang4, Ruth L. Katz5, and Feng Jiang1
1Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, 2Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, 3Division of Biostatistics of The University of Maryland Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD, 4Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD, 5Department of Pathology, The University of Texas M. D. Anderson Cancer Center, Houston, TX

Altered miRNA Expression in Sputum for Diagnosis of Non-small Cell Lung Cancer: 2010
Ying Xie1, evins W. Todd2, Zhenqiu Liu3, Min Zhan4, HongBin Fang3, Hong Peng1, Mohammed Alattar2, Janaki Deepak2, Sanford A. Stass1 and Feng Jiang1
1Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, 2Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, 3Division of Biostatistics of The University of Maryland Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD, 4Epidemiology and Preventive Medicine, University of Maryland School of Medicine, Baltimore

A non-genomic signaling pathway shut down by mating changes the estradiol-induced gene expression profile in the rat oviduct: 2010
Alexis Parada-Bustamante1,2, Pedro A Orihuela3,4, Mariana Ri´os1,2, Catherina A Cuevas3, Maria Lorena Oro´stica3, Luis A Vela´squez3,4, Manuel J Villalo´n1 and Horacio B Croxatto2,3,4
1Unidad de Reproduccio´n y Desarrollo, Facultad de Ciencias Biolo´gicas, Pontificia Universidad Cato´ lica de Chile, 8331010 Santiago, Chile, 2Millennium Institute for Fundamental and Applied Biology, 7780272 Santiago, Chile, 3Laboratorio de Inmunologi´a de la Reproduccio´n, Facultad de Qui´mica y Biologi´a, Universidad de Santiago de Chile, 9170022 Santiago, Chile and 4Centro para el Desarrollo de la Nanociencia y la Nanotecnologi´a (CEDENNA),9170124 Santiago, Chile

New insights into BMP-7 mediated osteoblastic differentiation of primary human mesenchymal stem cells: 2009
Lavery K, Hawley S, Swain P, Rooney R, Falb D and Alaoui-Ismaili MH
1Stryker Biotech, Hopkinton, MA 01748, USA.

Antiviral activity and host gene induction by tamarin and marmoset interferon- α and interferon- γ gamma in the GBV-B primary hepatocyte culture model: 2009
Deborah Chavez, Bernadette Guerra, and Robert E. Lanford
1Department of Virology and Immunology, Southwest Foundation for Biomedical Research and Southwest National Primate Research Center, 7620 NW Loop 410, San Antonio, TX 78227, USA.

Interferon-resistant Daudi Cell Line with a Stat2 Defect Is Resistant to Apoptosis Induced by Chemotherapeutic Agents*: 2009
Ziyun Du, Meiyun Fan, Jong-Gwan Kim, Dara Eckerle, Leonard Lothstein, Lai Wei and Lawrence M. Pfeffer1
1From the Department of Pathology and Laboratory Medicine, University of Tennessee Health Science Center and Center for Cancer Research, Memphis, Tennessee 38163

EBP1, an ErbB3-binding protein, is decreased in prostate cancer and implicated in hormone resistance: 2009
Yuexing Zhang1,2, Douglas Linn1,3, Zhenqiu Liu1, Jonathan Melamed4, Fabio Tavora2, Charles Y. Young5, Angelika M. Burger1,3 and Anne W. Hamburger1,2
1Greenebaum Cancer Center, 2Department of Pathology, and 3Department of Pharmacology and Experimental Therapeutics, University of Maryland School of Medicine, Baltimore, Maryland; 4Department of Pathology, New York University School of Medicine, New York, New York; and 5Mayo Clinic and Foundation, Rochester, Minnesota

Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1: 2009
Sang-Kyu Park, Patricia M. Tedesco and Thomas E. Johnson
Institute for Behavioral Genetics, University of Colorado, Box 447, Boulder, CO 80309, USA

Hepatic Gene Expression in Mobidly Obese Women: Implications for Disease Susceptability: 2009
Marshall B. Elam1,2, George S. Cowan Jr3, Robert J. Rooney4, M. Lloyd Hiler3, Chandrahasa R. Yellaturu2, Xiong Deng2, George E. Howell2, Edwards A. Park2, Ivan C. Gerling1, Divyan Patel4, J. Christopher Corton5, Lauren M. Cagen2,*, Henry G. Wilcox2, Malay Gandhi6, Micheal H. Bahr3, Micheal C. Allan6, Linus A. Wodi6, George A. Cook2, Thomas A. Hughes6 and Rajendra Raghow1,2
1Department of Medicine and Research Service, Veterans Affairs Medical Center, Memphis, Tennessee, USA. 2Department of Pharmacology, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA. 3Department of Surgery, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA. 4Genome Explorations Inc. Memphis, Tennessee, USA. 5US-EPA, Research Triangle Park, Durham, North Carolina, USA. 6Department of Medicine, University of Tennessee Health Sciences Center, Memphis, Tennessee, USA. *Deceased. Correspondence: Marshall B. Elam

Comparative effects of estradiol, methyl-piperidino-pyrazole, raloxifene, and ICI 182 780 on gene expression in the murine uterus: 2008
Angela M Davis1, 2, Jiude Mao1, Bushra Naz1, Jessica A Kohl1 and Cheryl S Rosenfeld1
Departments of 1Biomedical Sciences and 2Animal Sciences, 440F Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA

Transcriptome profile of the vascular endothelial cell response to Candida albicans: 2008
Katherine S. Barker 1, 3, Hyunsook Park5, Quynh T. Phan5 Lijing Xu4 Ramin Homayouni4 P. David Rogers1,2,3 and Scott G. Filler5,6
1Department of Clinical Pharmacy, College of Pharmacy, and 2Department of Pharmaceutical Sciences, College of Pharmacy, and Department of Pediatrics, College of Medicine, University of Tennessee Health Science Center, 3Children’s Foundation Research Center, Le Bonheur Children’s Medical Center, 4Division of Bioinformatics, College of Arts and Sciences, University of Memphis, Tennessee. 5St. John’s Cardiovascular Research Center, Division of Infectious Diseases, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor–University of California, Los Angeles (UCLA), Medical Center, Torrance, 6The David Geffen School of Medicine at UCLA, Los Angeles, California

The T7-Primer Is a Source of Experimental Bias and Introduces Variability between Microarray Platforms: 2008
Ron M. Kerkhoven*, Daoud Sie, Marja Nieuwland, Mike Heimerikx, Jorma De Ronde, Wim Brugman and Arno Velds
Central Microarray Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands

Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: Mouse forebrain weight: 2008
Lu Lu*1,2, Lai Wei4,5, Jeremy L Peirce2, Xusheng Wang2, Jianhua Zhou6, Ramin Homayouni5, Robert W Williams2 and David C Airey*3
1Jiangsu Key Laboratory of Neuroregeneration, Nantong University, PR China, 2Department of Anatomy and Neurobiology, University of Tennessee Health Sciences Center, Memphis, TN, 38103, USA, 3Department of Pharmacology, Vanderbilt University School of Medicine,Nashville, TN, 37232, USA, 4Department of Pathology and Laboratory Medicine, University of Tennessee Health Sciences Center, Memphis, TN,38103, USA, 5Department of Neurology, University of Tennessee Health Sciences Center, Memphis, TN, 38103, USA and 6Department of Medicine, University of Massachusetts Medical School, Worcester, MA, 01605

A Gain-of-Function Mutation in the Transcription Factor Upc2p Causes Upregulation of Ergosterol Biosynthesis Genes and Increased Fluconazole Resistance in a Clinical Candida albicans Isolate: 2008
Nico Dunkel1,§, Teresa T. Liu2, 4,§, Katherine S. Barker2, 6 Ramin Homayouni7, 8, Joachim Morschha¨user 1*‡ and P. David Rogers2,3,4,5,6*‡
Institut fu¨r Molekulare Infektionsbiologie, Universita¨t Wu¨rzburg, Ro¨ntgenring 11, D-97070 Wu¨rzburg, Germany. 1Departments of Clinical Pharmacy, 2Pharmaceutical Sciences, 3Molecular Sciences, 4and Pediatrics, 5University of Tennessee Health Science Center, Memphis, Tennessee 38163. 6Children’s Foundation Research Center of Memphis, Le Bonheur Children’s Medical Center, Memphis, Tennessee 381036. 7Bioinformatics Program, University of Memphis, Memphis, Tennessee 381527 and 8Department of Biology, University of Memphis, Memphis, Tennessee 381528

Differential Gene Expression Induced by Exposure of Captive Mink to Fuel Oil: A Model for the Sea Otter: 2008
Lizabeth Bowen1,4, Federica Riva1, Chuck Mohr2, Brian Aldridge3, Julie Schwartz2, A. Keith Miles4 and Jeffrey L. Stott1
1Laboratory for Marine Mammal Immunology, School of Veterinary Medicine, Department of Pathology, Microbiology and Immunology, University of California, One Shields Avenue, Davis, CA, 95616, USA. 2School of Veterinary Medicine, Department of Pathology, Microbiology and Immunology, University of California, Davis, CA, 95616, USA. 3Department of Veterinary Clinical Sciences, The Royal Veterinary College, The University of London, Hertfordshire, AL9 7TA, UK. 4Western Ecological Research Center, Davis Field Station, U.S. Geological Survey, Davis, CA, USA

Alterations in cell growth and signaling in ErbB3 binding protein-1 (Ebp1) deficient mice: 2008
Yuexing Zhang1,2, Yan Lu†3, Hua Zhou†1,2, Myounghee Lee2, Zhenqiu Liu4, Bret A Hassel2,5 and Anne W Hamburger*1,2
1Department of Pathology, University of Maryland School of Medicine, Baltimore, Maryland, USA, 2Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, Maryland, USA, 3Department of Oral and Maxillofacial Surgery, Shanghai Jiaotong University School of Medicine, Shanghai, PR China, 4Department of Epidemiology, University of Maryland School of Medicine, Baltimore,Maryland, USA and 5Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA

Opposing roles of netrin-1 and the dependence receptor DCC in cancer cell invasion, tumor growth, and metastasis: 2007
S Rodrigues1,2, O De Wever1,3, E Bruyneel3, RJ Rooney4 and C Gespach1,2
1INSERM, U673, Paris, France. 2Universite´ Pierre et Marie Curie-Paris 6, Faculte´ de Me´decine, Laboratory of Molecular and Clinical Oncology of Solid Tumors, Paris, France. 3Ghent University Hospital, Laboratory of Experimental Cancerology, Ghent, Belgium and 4Genome Explorations Inc., Memphis, TN, USA.

Hyperactivation of Ha-ras oncogene, but not Ink4a/Arf deficiency, triggers bladder tumorigenesis: 2007
Lan Mo1, Xiaoyong Zheng1, Hong-Ying Huang1, Ellen Shapiro1, Herbert Lepor1, 2, Carlos Cordon-Cardo3, Tung-Tien Sun1, 2, 4, 5 and Xue-Ru Wu1, 6
1Department of Urology and 2Department of Pharmacology, New York University Cancer Institute, New York University School of Medicine, New York, New York, USA. 3Division of Molecular Pathology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. 4Department of Cell Biology and 5Department of Dermatology, New York University Cancer Institute, New York University School of Medicine, New York, New York, USA. 6Manhattan Veterans Affairs Medical Center, New York, New York, USA.

Non-human primate fetal kidney transcriptome analysis indicates mammalian target of rapamycin (mTOR) is a central nutrient-responsive pathway: 2007
Mark J. Nijland1,2, Natalia E. Schlabritz-Loutsevitch1,2, Gene B. Hubbard3, Peter W. Nathanielsz1,2 and Laura A. Cox2,4
1Department of Obstetrics and Gynecology and Center for Pregnancy and Newborn Research, University of Texas Health Science Center, San Antonio, TX, USA 4Department of Genetics, 2South west National Primate Research Center and 3Division of Veterinary Resources, South west Foundation for Biomedical Research, San Antonio, TX, USA

Genome-Wide Expression and Location Analyses of the Candida albicans Tac1p Regulon: 2007
Teresa T. Liu1,2§, Sadri Znaidi3§, Katherine S. Barker1,2, Lijing Xu4, Ramin Homayouni 4,5, Saloua Saidane3, Joachim Morschha¨user 6, Andre´ Nantel7, Martine Raymond3,8‡ and P. David Rogers1,2‡**
Departments of Clinical Pharmacy, Pharmaceutical Sciences, Molecular Sciences, and Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, 381631; Children’s Foundation Research Center of Memphis, Le Bonheur Children’s Medical Center, Memphis, Tennessee 381032; Institute for Research in Immunology and Cancer, Universite´ de Montre´al, Montre´al, Quebec, Canada H3T 1J43; Bioinformatics Program, University of Memphis, Memphis, Tennessee 381524; Department of Biology, University of Memphis, Memphis, Tennessee 381525; Institut fu¨r Molekulare Infektionsbiologie, Universita¨t Wu¨rzburg, Ro¨ntgenring 11, D-97070 Wu¨rzburg, Germany6; Biotechnology Research Institute, National Research Council of Canada, Montre´al, Quebec,Canada H4P 2R27; and Department of Biochemistry, Universite´ de Montre´al, Montre´al, Quebec, Canada H3T 1J48

Lack of Response to Exogenous Interferon-α in the Liver of HCV Chronically Infected Chimpanzees: 2007
Robert E. Lanford1,2, Bernadette Guerra1, Catherine B. Bigger3, Helen Lee1, Deborah Chavez1 and Kathleen M. Brasky2
1Department of Virology and Immunology, Southwest Foundation for Biomedical Research, 7620 NW Loop 410, San Antonio, TX 78227, 2Southwest National Primate Research Center, 7620 NW Loop 410, San Antonio, TX 78227, 3Children’s Research Institute, Columbus, OH 45205

Leptin regulates gallbladder genes related to absorption and secretion: 2007
Deborah A. Swartz-Basile1, Debao Lu1, David P. Basile2, Shannon J. Graewin3, Hayder Al-Azzawi1, James M. Kiely3, Abhishek Mathur1, Kyle Yancey1, and Henry A. Pitt1
Departments of 1Surgery and 2Physiology, Indiana University School of Medicine, Indianapolis, Indiana; and 3Department of Surgery, Medical College of Wisconsin, Milwaukee, Wisconsin

Genetic Diversity among Enterococcus faecalis: 2007
Shonna M. McBride1, Vincent A. Fischetti2, Donald J. LeBlanc3¤, Robert C. Moellering Jr. 4, Michael S. Gilmore1*
1Schepens Eye Research Institute, Harvard Medical School, Boston, Massachusetts, United States of America. 2The Laboratory of Bacterial Pathogenesis and Immunology, The Rockefeller University, New York, New York, United States of America. 3Antibacterial Molecular Sciences, Global Research and Development, Pfizer, Inc., Ann Arbor, Michigan, United States of America. 4Department of Medicine, Beth Israel Deaconess Medical Center, and Harvard Medical School, Boston, Massachusetts, United States of America.

The role of LANP and ataxin 1 in E4F-mediated transcriptional repression: 2007
Marija Cvetanovic1, Robert J. Rooney2†, Jesus J. Garcia3, Nataliya Toporovskaya1, Huda Y. Zoghbi3 and Puneet Opal1+
1Davee Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA, 2Department of Molecular Genetics and Microbiology,DukeUniversity Medical Center, Durham, North Carolina, USA, and 3HowardHughes Medical Institute, Baylor College of Medicine, Houston, Texas, USA

Differential Cerebral Cortex Transcriptomes of Baboon Neonates Consuming Moderate and High Docosahexaenoic Acid Formulas: 2007
Kumar S. D. Kothapalli1, Joshua C. Anthony2, Bruce S. Pan1, Andrea T. Hsieh1, Peter W. Nathanielsz3, J. Thomas Brenna1*
1Division of Nutritional Sciences, Cornell University, Savage Hall, Ithaca, New York, United States of America. 2Mead Johnson and Company, Evansville, Indiana, United States of America. 3Center for Pregnancy and Newborn Research, University of Texas Health Science Center, San Antonio, Texas, United States of America

Gene expression profiling of microglia infected by a highly neurovirulent murine leukemia virus: implications for neuropathogenesis: 2007
Derek E Dimcheff1,4, L Gwenn Volkert2, Ying Li3, Angelo L DeLucia3 and William P Lynch3
1Laboratory of Persistent Viral Diseases, Rocky Mountain Laboratories, NIAID, NIH, Hamilton, MT. 2Department of Computer Science, Kent State University, Kent, Ohio. 3Department of Microbiology, Immunology, and Biochemistry, Northeastern Ohio Universities College of Medicine, Rootstown, Ohio. 4University of Michigan Medical School, Ann Arbor, MI.

Catechol-O-Methyltransferase and Methoxyestradiols Participate in the Intraoviductal Nongenomic Pathway Through Which Estradiol Accelerates Egg Transport in Cycling Rats: 2007
Alexis Parada-Bustamante3,4, Pedro A. Orihuela2,4,5, Mariana Rı´os3,4, Patricia A. Navarrete-Go´mez5, Catherina A. Cuevas5, Luis A. Velasquez4,5, Manuel J. Villalo´n3 and Horacio B. Croxatto3,4,5
Unidad de Reproduccio´n y Desarrollo, 3Facultad de Ciencias Biolo´gicas, Pontificia Universidad Cato´lica de Chile, Santiago 8331010, Chile Millennium Institute for Fundamental and Applied Biology, 4Santiago 7780272, Chile Laboratorio de Inmunologı´a de la Reproduccio´n, 5Facultad de Quı´mica y Biologı´a, Universidad de Santiago de Chile, Santiago 9170022, Chile

The histone deacetylase inhibitor belinostat (PXD101) suppresses bladder cancer cell growth in vitro and in vivo: 2007
Michael T Buckley3, Joanne Yoon1, 3, Herman Yee2,3, Luis Chiriboga2,3, Leonard Liebes3, Gulshan Ara6, Xiaozhong Qian6, Dean F Bajorin5, Tung-Tien Sun1, Xue-Ru Wu1,4 and Iman Osman*1,3
1Urology, New York University School of Medicine, New York, USA, 2Pathology, New York University School of Medicine, New York, USA, 3Medicine, New York University School of Medicine, New York, USA, 4Veterans Affairs Medical Center, New York, USA, 5Medicine, Memorial Sloan-Kettering Cancer Center, New York, USA and 6Curagen Corporation, Branford, USA

Gene expression profile differences in left and right liver lobes from mid-gestation fetal baboons: a cautionary tale: 2006
Laura A. Cox1,2, Natalia Schlabritz-Loutsevitch3, Gene B. Hubbard2, Mark J. Nijland3, Thomas J. McDonald3 and Peter W. Nathanielsz3
1Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX, USA. 2Southwest National Primate Research Center, Southwest Foundation for Biomedical Research, San Antonio, TX, USA. 3Department of Obstetrics and Gynecology and Center for Pregnancy and Newborn Research, University of Texas Health Science Center, San Antonio, TX, USA.

Effect of 30 percent maternal nutrient restriction from 0.16 to 0.5 gestation on fetal baboon kidney gene expression: 2006
L. A. Cox1,2,5, M. J. Nijland6, J. S. Gilbert6, N. E. Schlabritz-Loutsevitch5, 6, G. B. Hubbard4, 5, T. J. McDonald5,6, R. E. Shade3,5 and P.W. Nathanielsz5,6
1Department of Genetics, Southwest Foundation for Biomedical Research, 7620 NW Loop 410, San Antonio, TX 78227-5301, USA. 2Department of Genetics, 3Department of Physiology & Medicine, 4Department of Comparative Medicine and 5Southwest National Primate Research Center, Southwest Foundation for Biomedical Research, San Antonio, TX 78227, USA. 6Center for Pregnancy and Newborn Research, Department of Obstetrics and Gynecology, University of Texas Health Science Center, San Antonio, TX 78229, USA.

The Fly CAMTA Transcription Factor Potentiates Deactivation of Rhodopsin, a G Protein-Coupled Light Receptor: 2006
Junhai Han1,2, Ping Gong1,2, Keith Reddig1,2, Mirna Mitra1, Peiyi Guo1 and Hong-Sheng Li1
1Department of Neurobiology, University of Massachusetts Medical School, Worcester, MA 01605, USA. 2These authors contributed equally to this work.

NFκB Negatively Regulates Interferon-Induced Gene Expression and Anti-Influenza Activity: 2006
Lai Wei1,2, Matthew R. Sandbulte3, Paul G. Thomas4, Richard J. Webby3, Ramin Homayouni2 and Lawrence M. Pfeffer1,‡
1Departments of Pathology and Laboratory Medicine, University of Tennessee Health Science Center And the University of Tennessee Cancer Institute, Memphis, TN 38163. 2Department of Neurology, University of Tennessee Health Science Center And the University of Tennessee Cancer Institute, Memphis, TN 38163. 3Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, TN 38105. 4Department of Immunology, St. Jude Children’s Research Hospital, Memphis, TN 38105.

Gene expression profiling following constitutive activation of MEK1 and transformation of rat intestinal epithelial cells: 2006
Koga Komatsu1,2, F Gregory Buchanan3, Michiro Otaka2, Mario Jin2, Masaru Odashima2, Yohei Horikawa2, Sumio Watanabe2 and Raymond N DuBois*3
1Department of Gastroenterology, Honjo Daiichi General Hospital, Yurihonjo, Japan, 2Department of Gastroenterology/Internal Medicine, Akita University School of Medicine, Akita, Japan and 3Departments of Medicine and Cancer Biology, Vanderbilt-Ingram Cancer Center,Nashville, USA

Differential gene expression, GATA1 target genes, and the chemotherapy sensitivity of Down syndrome megakaryocytic leukemia: 2006
Yubin Ge, Alan A. Dombkowski, Katherine M. LaFiura, Dana Tatman, Ravikiran S. Yedidi, Mark L. Stout, Steven A. Buck, Gita Massey, David L. Becton, Howard J. Weinstein, Yaddanapudi Ravindranath, Larry H. Matherly, and Jeffrey W. Taub
From the Experimental and Clinical Therapeutics Program, Barbara Ann Karmanos Cancer Institute, Institute of Environmental Health Sciences, Wayne State University, Detroit, MI; Division of Pediatric Hematology/Oncology, Children’s Hospital of Michigan, Detroit, MI; Department of Pediatrics and Pharmacology, Wayne State University School of Medicine, Detroit, MI; Medical College of Virginia, Richmond, VA; University of Arkansas, Little Rock, AR; and Massachusetts General Hospital, Boston, MA.

Cultured lymphocytes from autistic children and non-autistic siblings up-regulate heat shock protein RNA in response to thimerosal challenge: 2006
Stephen J. Walkera, Jeffrey Segalb and Michael Aschnerb
aDepartment of Physiology and Pharmacology, Wake Forest University School of Medicine, Winston-Salem, NC 27156, United States. bDepartments of Pediatrics, Pharmacology, and the Kennedy Center, Vanderbilt University Medical Center, 1162 21st Avenue South, B-3307, Medical Center North, Nashville, TN 37232-2495, United States.

The ErbB3-binding protein Ebp1 suppresses androgen receptor-mediated gene transcription and tumorigenesis of prostate cancer cells: 2005
Yuexing Zhang*†, Xin-Wei Wang‡, Danijela Jelovac§¶, Takeo Nakanishi*¶, Myoung-hee Yu*, Damilola Akinmade*†, Olga Goloubeva*, Douglas D. Ross*, Angela Brodie*§ and Anne W. Hamburger*†**
*Greenebaum Cancer Center and Departments of †Pathology and §Pharmacology, University of Maryland School of Medicine, Baltimore, MD 21201. ‡Laboratory of Human Carcinogenesis, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 and װBaltimore Veterans Affairs Medical Center, Baltimore, MD 21201.

A functional profile of gene expression in ARPE-19 cells: 2005
Rajesh K Sharma, William E Orr, Allyson D Schmitt and Dianna A Johnson*
Department of Ophthalmology and Hamilton Eye Institute, University of Tennessee Health Science Center, 930 Madison Ave, Memphis, TN 38163, USA

Detoxification and Transcriptome Response in Arabidopsis Seedlings Exposed to the Allelochemical Benzoxazolin-2(3H)-one*: 2005
*Scott R. Baerson‡§, Adela Sa´nchez-Moreiras¶ǁ, Nuria Pedrol-Bonjoch*, Margot Schulz‡‡, Isabelle A. Kagan‡§§, Ameeta K. Agarwal¶¶, Manuel J. Reigosa¶ and Stephen O. Duke‡
‡United States Department of Agriculture, Agricultural Research Service, Natural Products Utilization Research Unit, University, Mississippi 38677. ¶Laboratorio de Ecofisioloxia Vexetal, Facultade de Ciencias, Universidade de Vigo, Vigo 36310, Spain. **A´ rea de Nutricio´n, Pastos y Forrajes, SERIDA, Estacio´n Experimental “La Mata,” Grado 33820, Spain. ‡‡Institut fu¨ r Molekulare Physiologie und Biotechnologie der Pflanzen, Universita¨ t Bonn, Biozentrum Karlrobert Kreiten Strasse 13, 53115 Bonn, Germany and ¶¶National Center for Natural Products Research, University of Mississippi, University, Mississippi 38677.

Identification of global gene expression differences between human lens epithelial and cortical fiber cells reveals specific genes and their associated pathways important for specialized lens cell functions: 2005
John R. Hawse1,2, Candida DeAmicis-Tress1, Tracy L. Cowell1 and Marc Kantorow1
1Department of Biomedical Science, Florida Atlantic University, Boca Raton, FL. 2Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN.

Transcriptional Profiling of Target of RNAIII-Activating Protein, a Master Regulator of Staphylococcal Virulence: 2005
Moshe Korem1, Yael Gov1, Madanahally D. Kiran2 and Naomi Balaban2*
1Department of Human Microbiology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel and 2Department of Biomedical Sciences Tufts University School of Veterinary Medicine,North Grafton, Massachusetts 01536.

Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function: 2005
Elissa J Chesler1,5, Lu Lu1,5, Siming Shou1, Yanhua Qu1, Jing Gu1, Jintao Wang1, Hui Chen Hsu2, John D Mountz2, Nicole E Baldwin3, Michael A Langston3, David W Threadgill4, Kenneth F Manly1 and Robert W Williams1
1University of Tennessee Health Science Center, 855 Monroe Avenue, Memphis, Tennessee 38163, USA. 2Department of Medicine, University of Alabama at Birmingham, 701 S. 19th St., Birmingham, Alabama 35294, USA. 3Department of Computer Science, University of Tennessee-Knoxville, Knoxville, Tennessee 37996-3450, USA. 4Department of Genetics, CB# 7264, University of North Carolina, Chapel Hill, North Carolina 27599, USA. 5These authors contributed equally to this work.

Temporal Changes in Gene Expression after Injury in the Rat Retina: 2004
Felix Vazquez-Chona, Bong K. Song, and nEldon E. Geisert Jr
From the Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, Tennessee.

The ldis1 lens mutation in RIIIS/J mice maps to chromosome 8 near cadherin 1: 2004
Monica M. Jablonski1,2, Lu Lu2, XiaoFei Wang1,2, Elissa J. Chesler2, Emily Carps2, Shuhua Qi2, Jing Gu2 and Robert W. Williams2
1Department of Ophthalmology, 2Center of Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis,TN

Probing the ArcA-P Modulon of Escherichia coli by Whole Genome Transcriptional Analysis and Sequence Recognition Profiling: 2004
Xueqiao Liu and Peter De Wulf ‡
From the Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, Massachusetts 02115

Molecular genetic responses to lysergic acid diethylamide include transcriptional activation of MAP kinase phosphatase-1, C/EBP-b and ILAD-1, a novel gene with homology to arrestins: 2004
Charles D. Nichols and Elaine Sanders-Bush
Department of Pharmacology, Vanderbilt University School of Medicine, Nashville, Tennessee, USA

Dietary Olive Oil and Menhaden Oil Mitigate Induction of Lipogenesis in Hyperinsulinemic Corpulent JCR:LA-cp Rats: Microarray Analysis of Lipid-Related Gene Expression: 2004
Xiong Deng Ph.D1,2, Marshall B Elam Ph.D M.D.1,2,4, Henry G. Wilcox Ph.D.2, Lauren M. Cagen Ph.D.2, Edwards Park Ph.D.2, Rajendra Raghow Ph.D.1,2, Divyen Patel Ph.D.3, Poonam Kumar B.S.2, Ali Sheybani M.D.4 and James C. Russell Ph.D.5
1Department of Veterans Affairs Medical Center, Memphis Tn. 2Department of Pharmacology, University of Tennessee Health Sciences Center, Memphis , Tn. 3Genome Explorations Inc, Memphis Tn. 4Department of Medicine, University of Tennessee Health Sciences Center, Memphis, Tn. 5Department of Agriculture, Food and Nutritional Sciences, University of Alberta, Edmonton, Canada.

Role of Nuclear Factor-кB in the Antiviral Action of Interferon and Interferon-regulated Gene Expression*: 2003
Lawrence M. Pfeffer‡§, Jong-Gwan Kim‡, Susan R. Pfeffer‡, Dennis J. Carrigan‡ Darren P. Baker¶, Lai Wei and Ramin Homayouni
From the Departments of ‡Pathology and Laboratory Medicine and ǁNeurology, University of Tennessee Health Science Center, Memphis, Tennessee 38103. ¶Biogen Idec, Incorporated, Cambridge, Massachusetts 02142.

Genome-wide Expression Profiling of the Response to Polyene, Pyrimidine, Azole, and Echinocandin Antifungal Agents in Saccharomyces cerevisiae*: 2003
Ameeta K. Agarwal‡§, P. David Rogers¶, Scott R. Baersonǁ, Melissa R. Jacob‡, Katherine S. Barker¶, John D. Cleary**, Larry A. Walker‡ ‡‡, Dale G. Nagle§§¶¶ and Alice M. Clark‡§§
From the ‡National Center for Natural Products Research, §§Department of Pharmacognosy, the ‡‡Department of Pharmacology, and ¶¶Research Institute of Pharmaceutical Sciences, University of Mississippi School of Pharmacy, University, Mississippi 38677, the ¶Departments of Pharmacy, Pharmaceutical Sciences and Pediatrics, Colleges of Pharmacy and Medicine, University of Tennessee Health Science Center, Memphis, Tennessee 38163, the ǁUnited States Department of Agriculture, Agricultural Research Service, Natural Products Utilization Research Unit, University, Mississippi 38677, and the **Departments of Clinical Pharmacy Practice and Medicine, Schools of Pharmacy and Medicine, University of Mississippi Medical Center, Jackson, Mississippi 39216

Identification and functional clustering of global gene expression differences between human age-related cataract and clear lenses: 2003
John R. Hawse1,2, James F. Hejtmancik3, Quingling Huang4, Nancy L. Sheets2, Douglas A. Hosack5, Richard A. Lempicki5, Joseph Horwitz4 and Marc Kantorow1
1Biomedical Sciences, Florida Atlantic University, Boca Raton, FL. 2Department of Biology, West Virginia University, Morgantown, WV. 3OGVFB/NIH, Bethesda, MD. 4UCLA School of Medicine, Jules Stein Eye Institute, Los Angeles, CA. 5Laboratory of Immunopathogenesis and Bioinformatics, SAIC Frederick Inc., Frederick, MD.

Identification of genes differentially expressed in association with reduced azole susceptibility in Saccharomyces cerevisiae: 2003
Katherine S. Barker1, Margaret M. Pearson2 and P. David Rogers1,3,4
Departments of 1Pharmacy and 3Pharmaceutical Sciences, College of Pharmacy; 4Department of Pediatrics, College of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163. 2Department of Pharmacy Practice, School of Pharmacy,University of Mississippi, Jackson, MS 39216, USA.

Aldosteronism: an immunostimulatory state precedes proinflammatory/fibrogenic cardiac phenotype: 2003
Ivan C. Gerling1, Yao Sun2, Robert A. Ahokas3, Linus A. Wodi2, Syamal K. Bhattacharya4, Kenneth J. Warrington5, Arnold E. Postlethwaite5 and Karl T. Weber2
Divisions of 1Endocrinology, 2Cardiovascular Diseases, and 5Connective Tissue Diseases, Department of Medicine; and Departments of 3Obstetrics and Gynecology and 4Surgery, University of Tennessee Health Science Center, Memphis, Tennessee 38163

Use of Microarray Technology for Determining Gene Expression Signatures for Different Disease States: 2003
Rashmi S. Goswami,1,3,* Mahadeo A. Sukhai,1,2,* Mariam Thomas,1,2,* Patricia P. Reis,1 and Suzanne Kamel-Reid1,2,3
1 Division of Applied Molecular Oncology, Princess Margaret Hospital/the Ontario Cancer Institute, University Health Network, Toronto, ON, Canada 2 Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada 3 Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada *Authors contributed equally to this work.

Towards A Genetic Signature of Lymph Node Positive Breast Cancer: 2003
Paul Hergenroeder1,2, David Peters3, Dan Handley3, David Dabbs4, James Lyones-Weiler1, Soumyaroop Bhattacharya1 and Adam Brufsky1,2,4


Genetic sources of individual differences in the cerebellum: 2002
David C Airey, Lu Lu, Siming Shou and Robert W Williams
Department of Anatomy and Neurobiology, University of Tennessee, Memphis, TN, USA

Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling: 2002
Eng-Juh Yeoh1,7,11, Mary E. Ross2,11, Sheila A. Shurtleff1, W. Kent Williams1, Divyen Patel6, Rami Mahfouz1, Fred G. Behm1, Susana C. Raimondi1, Mary V. Relling3, Anami Patel1, Cheng Cheng4, Dario Campana1,2, Dawn Wilkins8, Xiaodong Zhou8, Jinyan Li9, Huiqing Liu9, Ching-Hon Pui2, William E. Evans3, Clayton Naeve6, Limsoon Wong9, and James R. Downing1,5,1
1Department of Pathology 2Department of Hematology-Oncology 3Department of Pharmaceutical Sciences 4Department of Biostatistics 5Department of Tumor Cell Biology 6Hartwell Center for Bioinformatics and Biotechnology St. Jude Children’s Research Hospital, Memphis, Tennessee 381057 The Department of Pediatrics, National University of Singapore, National University Hospital, 5 LowerKent Ridge Road,Singapore 119074 8The Department of Computer and Information Sciences, University of Mississippi, Oxford, Mississippi 9Laboratories for Information Technologies, 21 Heng Mui Keng Terrace, Singapore 119613 10Correspondence: jim.downing@stjude.org 11These authors contributed equally to this work.

Shaping Gene Expression in Activated and Resting Primary Macrophages by IL-101: 2002
Roland Lang*, Divyen Patel2†, John J. Morris†, Robert L. Rutschman and Peter J. Murray3**
*Department of Infectious Diseases and †Hartwell Center for Biotechnology and Bioinformatics, St. Jude Children’s Research Hospital, Memphis, TN 38015. 1This work was supported by American Heart Association Grant 0151039B to P.J.M., Cancer Center CORE Grant P30 CA 21765, and by the American Lebanese Syrian Association of Charities. R.L. was a recipient of a fellowship from the Deutsche Forschungsgemeinschaft (LA-12621). 2Current address: Boling Center, 711 Jefferson Avenue, No. 415, Memphis, TN38163. 3Department of Infectious Diseases, St. Jude Children’s Research Hospital, 332 North Lauderdale, Memphis, TN 38105.

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